Jan Štourač
Jan Štourač
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PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...
PLoS computational biology 10 (1), e1003440, 2014
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...
Bioinformatics 34 (20), 3586-3588, 2018
HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information
L Sumbalova, J Stourac, T Martinek, D Bednar, J Damborsky
Nucleic Acids Research 46 (W1), W356-W362, 2018
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport
J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ...
Nucleic acids research 47 (W1), W414-W422, 2019
PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions
J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský
PLoS computational biology 12 (5), e1004962, 2016
FireProt: web server for automated design of thermostable proteins
M Musil, J Stourac, J Bendl, J Brezovsky, Z Prokop, J Zendulka, ...
Nucleic acids research 45 (W1), W393-W399, 2017
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering
J Bendl, J Stourac, E Sebestova, O Vavra, M Musil, J Brezovsky, ...
Nucleic acids research 44 (W1), W479-W487, 2016
FireProtDB: database of manually curated protein stability data
J Stourac, J Dubrava, M Musil, J Horackova, J Damborsky, S Mazurenko, ...
Nucleic acids research 49 (D1), D319-D324, 2021
EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities
J Hon, S Borko, J Stourac, Z Prokop, J Zendulka, D Bednar, T Martinek, ...
Nucleic acids research 48 (W1), W104-W109, 2020
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels
O Vavra, J Filipovic, J Plhak, D Bednar, SM Marques, J Brezovsky, ...
Bioinformatics 35 (23), 4986-4993, 2019
Computational design of enzymes for biotechnological applications
J Planas-Iglesias, SM Marques, GP Pinto, M Musil, J Stourac, ...
Biotechnology Advances 47, 107696, 2021
FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction
M Musil, RT Khan, A Beier, J Stourac, H Konegger, J Damborsky, ...
Briefings in bioinformatics 22 (4), bbaa337, 2021
CalFitter: a web server for analysis of protein thermal denaturation data
S Mazurenko, J Stourac, A Kunka, S Nedeljković, D Bednar, Z Prokop, ...
Nucleic acids research 46 (W1), W344-W349, 2018
PDBe-KB: collaboratively defining the biological context of structural data
Nucleic acids research 50 (D1), D534-D542, 2022
Fast screening of inhibitor binding/unbinding using novel software tool CaverDock
GP Pinto, O Vavra, J Filipovic, J Stourac, D Bednar, J Damborsky
Frontiers in Chemistry 7, 709, 2019
Fully Automated Ancestral Sequence Reconstruction using FireProtASR
RT Khan, M Musil, J Stourac, J Damborsky, D Bednar
Current Protocols 1 (2), e30, 2021
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering
J Planas-Iglesias, F Opaleny, P Ulbrich, J Stourac, Z Sanusi, GP Pinto, ...
Nucleic Acids Research 50 (W1), W465-W473, 2022
Top 10 metrics for life science software good practices
H Artaza, NC Hong, M Corpas, A Corpuz, R Hooft, RC Jiménez, ...
F1000Research 5, 2016
NewProt–a protein engineering portal
A Schwarte, M Genz, L Skalden, A Nobili, C Vickers, O Melse, R Kuipers, ...
Protein Engineering, Design and Selection 30 (6), 441-447, 2017
Virtual screening of potential anticancer drugs based on microbial products
GP Pinto, NM Hendrikse, J Stourac, J Damborsky, D Bednar
Seminars in Cancer Biology 86, 1207-1217, 2022
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