Tcf1 and Lef1 transcription factors establish CD8+ T cell identity through intrinsic HDAC activity S Xing, F Li, Z Zeng, Y Zhao, S Yu, Q Shan, Y Li, FC Phillips, PK Maina, ... Nature immunology 17 (6), 695-703, 2016 | 213 | 2016 |
Automated and fast building of three-dimensional RNA structures Y Zhao, Y Huang, Z Gong, Y Wang, J Man, Y Xiao Scientific reports 2 (1), 734, 2012 | 203 | 2012 |
Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis J Wang, K Mao, Y Zhao, C Zeng, J Xiang, Y Zhang, Y Xiao Nucleic acids research 45 (11), 6299-6309, 2017 | 111 | 2017 |
3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures J Wang, Y Zhao, C Zhu, Y Xiao Nucleic acids research 43 (10), e63-e63, 2015 | 95 | 2015 |
Wave propagation and synchronization induced by chemical autapse in chain Hindmarsh–Rose neural network M Ge, Y Jia, Y Xu, L Lu, H Wang, Y Zhao Applied Mathematics and Computation 352, 136-145, 2019 | 85 | 2019 |
Spiking activities in chain neural network driven by channel noise with field coupling Y Xu, Y Jia, H Wang, Y Liu, P Wang, Y Zhao Nonlinear Dynamics 95, 3237-3247, 2019 | 85 | 2019 |
Molecular dynamics simulation reveals insights into the mechanism of unfolding by the A130T/V mutations within the MID1 zinc-binding Bbox1 domain Y Zhao, C Zeng, MA Massiah PloS one 10 (4), e0124377, 2015 | 67 | 2015 |
RNA stability under different combinations of amber force fields and solvation models Z Gong, Y Zhao, Y Xiao Journal of Biomolecular Structure and Dynamics 28 (3), 431-441, 2010 | 51 | 2010 |
Role of Ligand Binding in Structural Organization of Add A-riboswitch Aptamer: A Molecular Dynamics Simulation Z Gong, Y Zhao, C Chen, Y Xiao Journal of Biomolecular Structure and Dynamics 29 (2), 403-416, 2011 | 50 | 2011 |
RBind: computational network method to predict RNA binding sites K Wang, Y Jian, H Wang, C Zeng, Y Zhao Bioinformatics 34 (18), 3131-3136, 2018 | 41 | 2018 |
Effects of Lycium barbarum polysaccharides on health and aging of C. elegans depend on daf-12/daf-16 Z Zhang, Y Zhou, H Fan, KJ Billy, Y Zhao, X Zhan, L Yang, Y Jia Oxidative medicine and cellular longevity 2019, 2019 | 40 | 2019 |
Evaluation of RNA secondary structure prediction for both base-pairing and topology Y Zhao, J Wang, C Zeng, Y Xiao Biophysics reports 4, 123-132, 2018 | 39 | 2018 |
Propagation characteristics of weak signal in feedforward Izhikevich neural networks M Ge, Y Jia, L Lu, Y Xu, H Wang, Y Zhao Nonlinear Dynamics 99, 2355-2367, 2020 | 37 | 2020 |
Improvements of the hierarchical approach for predicting RNA tertiary structure Y Zhao, Z Gong, Y Xiao Journal of Biomolecular Structure and Dynamics 28 (5), 815-826, 2011 | 35 | 2011 |
Insights into Ligand Binding to PreQ1 Riboswitch Aptamer from Molecular Dynamics Simulations Z Gong, Y Zhao, C Chen, Y Duan, Y Xiao PloS one 9 (3), e92247, 2014 | 31 | 2014 |
Trace, machine learning of signal images for trace-sensitive mass spectrometry: a case study from single-cell metabolomics Z Liu, EP Portero, Y Jian, Y Zhao, RM Onjiko, C Zeng, P Nemes Analytical chemistry 91 (9), 5768-5776, 2019 | 29 | 2019 |
A new role for STAT3 as a regulator of chromatin topology Y Zhao, C Zeng, NI Tarasova, S Chasovskikh, A Dritschilo, OA Timofeeva Transcription 4 (5), 227-231, 2013 | 26 | 2013 |
Break CDK2/Cyclin E1 interface allosterically with small peptides H Chen, Y Zhao, H Li, D Zhang, Y Huang, Q Shen, R Van Duyne, ... PLoS One 9 (10), e109154, 2014 | 22 | 2014 |
DIRECT: RNA contact predictions by integrating structural patterns Y Jian, X Wang, J Qiu, H Wang, Z Liu, Y Zhao, C Zeng BMC bioinformatics 20, 1-12, 2019 | 21 | 2019 |
HKPocket: human kinase pocket database for drug design H Wang, J Qiu, H Liu, Y Xu, Y Jia, Y Zhao BMC bioinformatics 20, 1-11, 2019 | 20 | 2019 |