| 3D genomics across the tree of life reveals condensin II as a determinant of architecture type C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ... Science 372 (6545), 984-989, 2021 | 151 | 2021 |
| Effects of pH and salt concentration on stability of a protein G variant using coarse-grained models VM de Oliveira, V de Godoi Contessoto, FB da Silva, DLZ Caetano, ... Biophysical Journal 114 (1), 65-75, 2018 | 43* | 2018 |
| Exploring chromosomal structural heterogeneity across multiple cell lines RR Cheng, VG Contessoto, E Lieberman Aiden, PG Wolynes, M Di Pierro, ... Elife 9, e60312, 2020 | 42 | 2020 |
| Analyzing the effect of homogeneous frustration in protein folding VG Contessoto, DT Lima, RJ Oliveira, AT Bruni, J Chahine, VBP Leite Proteins: Structure, Function, and Bioinformatics 81 (10), 1727-1737, 2013 | 42 | 2013 |
| Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain DI Staquicini, FHF Tang, C Markosian, VJ Yao, FI Staquicini, ... Proceedings of the national academy of sciences 118 (30), e2105739118, 2021 | 41 | 2021 |
| NTL9 folding at constant pH: the importance of electrostatic interaction and pH dependence VG Contessoto, VM De Oliveira, SJ De Carvalho, LC Oliveira, VBP Leite Journal of Chemical Theory and Computation 12 (7), 3270-3277, 2016 | 31 | 2016 |
| TKSA‐MC: A web server for rational mutation through the optimization of protein charge interactions VG Contessoto, VM de Oliveira, BR Fernandes, GG Slade, VBP Leite Proteins: Structure, Function, and Bioinformatics 86 (11), 1184-1188, 2018 | 28 | 2018 |
| Quantifying nonnative interactions in the protein-folding free-energy landscape PR Mouro, V de Godoi Contessoto, J Chahine, RJ de Oliveira, VBP Leite Biophysical Journal 111 (2), 287-293, 2016 | 27 | 2016 |
| Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion S Brahmachari, VG Contessoto, M Di Pierro, JN Onuchic Nucleic Acids Research 50 (8), 4258-4271, 2022 | 26 | 2022 |
| A scalable computational approach for simulating complexes of multiple chromosomes ABO Junior, VG Contessoto, MF Mello, JN Onuchic Journal of molecular biology 433 (6), 166700, 2021 | 26 | 2021 |
| The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome VG Contessoto, RR Cheng, A Hajitaheri, E Dodero-Rojas, MF Mello, ... Nucleic Acids Research 49 (D1), D172-D182, 2021 | 24 | 2021 |
| AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes S Jin, VG Contessoto, M Chen, NP Schafer, W Lu, X Chen, C Bueno, ... Nucleic acids research 48 (W1), W25-W30, 2020 | 23 | 2020 |
| Cold shock protein A from Corynebacterium pseudotuberculosis: role of electrostatic forces in the stability of the secondary structure M A Coronado, I P Caruso, V M de Oliveira, V G Contessoto, V BP Leite, ... Protein and Peptide Letters 24 (4), 358-367, 2017 | 19 | 2017 |
| Non-native cooperative interactions modulate protein folding rates F Bruno da Silva, VG Contessoto, VM De Oliveira, J Clarke, VBP Leite The Journal of Physical Chemistry B 122 (48), 10817-10824, 2018 | 18* | 2018 |
| SMOG 2 and OpenSMOG: Extending the limits of structure‐based models AB de Oliveira Jr, VG Contessoto, A Hassan, S Byju, A Wang, Y Wang, ... Protein Science 31 (1), 158-172, 2022 | 16 | 2022 |
| Drift-diffusion (DrDiff) framework determines kinetics and thermodynamics of two-state folding trajectory and tunes diffusion models FC Freitas, AN Lima, VG Contessoto, PC Whitford, RJ Oliveira The Journal of Chemical Physics 151 (11), 2019 | 16 | 2019 |
| Inferring a weighted elastic network from partial unfolding with coarse‐grained simulations MR de Mendonca, LG Rizzi, V Contessoto, VBP Leite, NA Alves Proteins: Structure, Function, and Bioinformatics 82 (1), 119-129, 2014 | 15 | 2014 |
| Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de Janeiro E Dodero-Rojas, LG Ferreira, VBP Leite, JN Onuchic, VG Contessoto PloS one 15 (1), e0222900, 2020 | 14 | 2020 |
| Genetic and structural analysis of SARS-CoV-2 spike protein for universal epitope selection C Markosian, DI Staquicini, P Dogra, E Dodero-Rojas, JH Lubin, ... Molecular biology and evolution 39 (5), msac091, 2022 | 12* | 2022 |
| Introdução ao problema de enovelamento de proteínas: uma abordagem utilizando modelos computacionais simplificados V de Godoi Contessoto, AB de Oliveira Junior, J Chahine, RJ de Oliveira, ... Revista Brasileira de Ensino de Física 40 (4), e4307, 2018 | 12 | 2018 |
Jose OnuchicCTBP Rice UniversityPotvrđena adresa e-pošte na rice.edu
