Diego U. Ferreiro
Diego U. Ferreiro
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Cited by
Cited by
Xanthomonas campestris pv. campestrisgum Mutants: Effects on Xanthan Biosynthesis and Plant Virulence
F Katzen, DU Ferreiro, CG Oddo, MV Ielmini, A Becker, A Pühler, L Ielpi
Journal of bacteriology 180 (7), 1607-1617, 1998
Localizing frustration in native proteins and protein assemblies
DU Ferreiro, JA Hegler, EA Komives, PG Wolynes
Proceedings of the National Academy of Sciences 104 (50), 19819-19824, 2007
Frustration in biomolecules
DU Ferreiro, EA Komives, PG Wolynes
Quarterly reviews of biophysics 47 (4), 285-363, 2014
On the role of frustration in the energy landscapes of allosteric proteins
DU Ferreiro, JA Hegler, EA Komives, PG Wolynes
Proceedings of the National Academy of Sciences 108 (9), 3499-3503, 2011
Protein frustratometer: a tool to localize energetic frustration in protein molecules
M Jenik, RG Parra, LG Radusky, A Turjanski, PG Wolynes, DU Ferreiro
Nucleic acids research 40 (W1), W348-W351, 2012
Molecular mechanisms of system control of NF-κB signaling by IκBα
DU Ferreiro, EA Komives
Biochemistry 49 (8), 1560-1567, 2010
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics
RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ...
Nucleic acids research 44 (W1), W356-W360, 2016
Folding landscapes of ankyrin repeat proteins: experiments meet theory
D Barrick, DU Ferreiro, EA Komives
Current opinion in structural biology 18 (1), 27-34, 2008
Consequences of localized frustration for the folding mechanism of the IM7 protein
L Sutto, J Lätzer, JA Hegler, DU Ferreiro, PG Wolynes
Proceedings of the National Academy of Sciences 104 (50), 19825-19830, 2007
The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family
DU Ferreiro, SS Cho, EA Komives, PG Wolynes
Journal of molecular biology 354 (3), 679-692, 2005
Stabilizing IκBα by “consensus” design
DU Ferreiro, CF Cervantes, SME Truhlar, SS Cho, PG Wolynes, ...
Journal of molecular biology 365 (4), 1201-1216, 2007
The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures
DU Ferreiro, AM Walczak, EA Komives, PG Wolynes
PLoS computational biology 4 (5), e1000070, 2008
Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes
PO Craig, J Lätzer, P Weinkam, RMB Hoffman, DU Ferreiro, EA Komives, ...
Journal of the American Chemical Society 133 (43), 17463-17472, 2011
Frustration, function and folding
DU Ferreiro, EA Komives, PG Wolynes
Current opinion in structural biology 48, 68-73, 2018
A protein–DNA binding mechanism proceeds through multi-state or two-state parallel pathways
DU Ferreiro, G de Prat-Gay
Journal of molecular biology 331 (1), 89-99, 2003
Structural and energetic characterization of the ankyrin repeat protein family
RG Parra, R Espada, N Verstraete, DU Ferreiro
PLoS computational biology 11 (12), e1004659, 2015
Distinctive cognate sequence discrimination, bound DNA conformation, and binding modes in the E2 C-terminal domains from prototype human and bovine papillomaviruses
DU Ferreiro, LMTR Lima, AD Nadra, LG Alonso, FA Goldbaum, ...
Biochemistry 39 (47), 14692-14701, 2000
Free energy contributions to direct readout of a DNA sequence
DU Ferreiro, M Dellarole, AD Nadra, G de Prat-Gay
Journal of Biological Chemistry 280 (37), 32480-32484, 2005
Fuzziness and frustration in the energy landscape of protein folding, function, and assembly
S Gianni, MI Freiberger, P Jemth, DU Ferreiro, PG Wolynes, M Fuxreiter
Accounts of chemical research 54 (5), 1251-1259, 2021
Detecting repetitions and periodicities in proteins by tiling the structural space
RG Parra, R Espada, IE Sánchez, MJ Sippl, DU Ferreiro
The Journal of Physical Chemistry B 117 (42), 12887-12897, 2013
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