Efrem Lim
Efrem Lim
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Early life dynamics of the human gut virome and bacterial microbiome in infants
ES Lim, Y Zhou, G Zhao, IK Bauer, L Droit, IM Ndao, BB Warner, PI Tarr, ...
Nature medicine 21 (10), 1228-1234, 2015
Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome
CL Monaco, DB Gootenberg, G Zhao, SA Handley, MS Ghebremichael, ...
Cell host & microbe 19 (3), 311-322, 2016
The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx
ES Lim, OI Fregoso, CO McCoy, FA Matsen, HS Malik, M Emerman
Cell host & microbe 11 (2), 194-204, 2012
Identification of MW polyomavirus, a novel polyomavirus in human stool
EA Siebrasse, A Reyes, ES Lim, G Zhao, RS Mkakosya, MJ Manary, ...
Journal of virology 86 (19), 10321-10326, 2012
Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing
ES Lim, A Reyes, M Antonio, D Saha, UN Ikumapayi, M Adeyemi, ...
Virology 436 (2), 295-303, 2013
Ancient adaptive evolution of tetherin shaped the functions of Vpu and Nef in human immunodeficiency virus and primate lentiviruses
ES Lim, HS Malik, M Emerman
Journal of virology 84 (14), 7124-7134, 2010
An 81-nucleotide deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (January to March 2020)
LRA Holland, EA Kaelin, R Maqsood, B Estifanos, LI Wu, A Varsani, ...
Journal of virology 94 (14), e00711-20, 2020
Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
ES Lim, C Rodriguez, LR Holtz
Microbiome 6 (1), 1-8, 2018
VirusSeeker, a computational pipeline for virus discovery and virome composition analysis
G Zhao, G Wu, ES Lim, L Droit, S Krishnamurthy, DH Barouch, HW Virgin, ...
Virology 503, 21-30, 2017
The bacterial microbiome and virome milestones of infant development
ES Lim, D Wang, LR Holtz
Trends in microbiology 24 (10), 801-810, 2016
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants
RS Fontenele, S Kraberger, J Hadfield, EM Driver, D Bowes, LRA Holland, ...
Water Research 205, 117710, 2021
An intracellular pathogen response pathway promotes proteostasis in C. elegans
KC Reddy, T Dror, JN Sowa, J Panek, K Chen, ES Lim, D Wang, ...
Current Biology 27 (22), 3544-3553. e5, 2017
Discordant transmission of bacteria and viruses from mothers to babies at birth
R Maqsood, R Rodgers, C Rodriguez, SA Handley, IM Ndao, PI Tarr, ...
Microbiome 7 (1), 1-13, 2019
Characterization of BK polyomaviruses from kidney transplant recipients suggests a role for APOBEC3 in driving in-host virus evolution
A Peretti, EM Geoghegan, DV Pastrana, S Smola, P Feld, M Sauter, ...
Cell host & microbe 23 (5), 628-635. e7, 2018
Vpx overcomes a SAMHD1-independent block to HIV reverse transcription that is specific to resting CD4 T cells
HM Baldauf, L Stegmann, SM Schwarz, I Ambiel, M Trotard, M Martin, ...
Proceedings of the National Academy of Sciences 114 (10), 2729-2734, 2017
Gut DNA virome diversity and its association with host bacteria regulate inflammatory phenotype and neuronal immunotoxicity in experimental gulf war illness
RK Seth, R Maqsood, A Mondal, D Bose, D Kimono, LRA Holland, ...
Viruses 11 (10), 968, 2019
Simian Immunodeficiency Virus SIVagm from African Green Monkeys Does Not Antagonize Endogenous Levels of African Green Monkey Tetherin/BST-2
ES Lim, M Emerman
Journal of virology 83 (22), 11673-11681, 2009
The function and evolution of the restriction factor Viperin in primates was not driven by lentiviruses
ES Lim, LI Wu, HS Malik, M Emerman
Retrovirology 9 (1), 1-12, 2012
The major locus for mouse adenovirus susceptibility maps to genes of the hematopoietic cell surface-expressed LY6 family
KR Spindler, AR Welton, ES Lim, S Duvvuru, IW Althaus, JE Imperiale, ...
The Journal of Immunology 184 (6), 3055-3062, 2010
An early pandemic analysis of SARS-CoV-2 population structure and dynamics in Arizona
JT Ladner, BB Larsen, JR Bowers, CM Hepp, E Bolyen, M Folkerts, ...
MBio 11 (5), e02107-20, 2020
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