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Yijun Ruan
Yijun Ruan
Professor and Director, Genomic Sciences
Verified email at jax.org
Title
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Cited by
Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
56982007
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
47392012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
45322012
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
36222005
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
YH Loh, Q Wu, JL Chew, VB Vega, W Zhang, X Chen, G Bourque, ...
Nature genetics 38 (4), 431-440, 2006
28432006
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
X Chen, H Xu, P Yuan, F Fang, M Huss, VB Vega, E Wong, YL Orlov, ...
Cell 133 (6), 1106-1117, 2008
27542008
International network of cancer genome projects
Data coordination centre Kasprzyk (Leader) Arek 1 Stein (Leader) Lincoln D ...
Nature 464 (7291), 993-998, 2010
20392010
An oestrogen-receptor-α-bound human chromatin interactome
MJ Fullwood, MH Liu, YF Pan, J Liu, H Xu, YB Mohamed, YL Orlov, ...
Nature 462 (7269), 58-64, 2009
17432009
A global map of p53 transcription-factor binding sites in the human genome
CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, ...
Cell 124 (1), 207-219, 2006
13662006
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
12152012
Functional metagenomic profiling of nine biomes
EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ...
Nature 452 (7187), 629-632, 2008
10492008
The draft genome of sweet orange (Citrus sinensis)
Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ...
Nature genetics 45 (1), 59-66, 2013
8632013
CTCF-mediated human 3D genome architecture reveals chromatin topology for transcription
Z Tang, OJ Luo, X Li, M Zheng, JJ Zhu, P Szalaj, P Trzaskoma, ...
Cell 163 (7), 1611-1627, 2015
7942015
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
S Schoenfelder, T Sexton, L Chakalova, NF Cope, A Horton, S Andrews, ...
Nature genetics 42 (1), 53-61, 2010
7752010
CTCF-mediated functional chromatin interactome in pluripotent cells
L Handoko, H Xu, G Li, CY Ngan, E Chew, M Schnapp, CWH Lee, C Ye, ...
Nature genetics 43 (7), 630-638, 2011
7332011
RNA viral community in human feces: prevalence of plant pathogenic viruses
T Zhang, M Breitbart, WH Lee, JQ Run, CL Wei, SWL Soh, ML Hibberd, ...
PLoS biology 4 (1), e3, 2006
7002006
Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection
YJ Ruan, CL Wei, AE Ling, VB Vega, H Thoreau, SYS Thoe, JM Chia, ...
The Lancet 361 (9371), 1779-1785, 2003
6952003
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)
DS Gerhard, L Wagner, EA Feingold, CM Shenmen, LH Grouse, ...
Genome research 14 (10 B), 2121-2127, 2004
6812004
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ...
Nature genetics 44 (5), 570-574, 2012
6382012
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
XD Zhao, X Han, JL Chew, J Liu, KP Chiu, A Choo, YL Orlov, WK Sung, ...
Cell stem cell 1 (3), 286-298, 2007
6242007
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