Debora Marks

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Chris SanderHarvard Medical School, Broad Institute, MGH, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Thomas A. HopfScientific ConsultantVerified email at thomashopf.com
John IngrahamGenerate Biomedicines, IncVerified email at csail.mit.edu
Anton EnrightProfessor of RNA Biology and Genomics, Pathology Dept., University of CambridgeVerified email at cam.ac.uk
Anna G. GreenAssistant Professor, Manning College of Information and Computer Sciences, UMass, AmherstVerified email at umass.edu
Charlotta ScharfePrincipal Data Scientist, F. Hoffmann-La Roche, SwitzerlandVerified email at roche.com
Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityVerified email at unibocconi.it
Doron BetelAssistant Professor of Computational Biomedicine, Weill Cornell Medical CollegeVerified email at med.cornell.edu
Christina LeslieMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Andrea PagnaniProfessor at DISAT - Politecnico di Torino, and PI at the IIGMVerified email at polito.it
James J. RussoResearch Scientist, Associate DirectorVerified email at columbia.edu
Martin WeigtSorbonne Université Paris (former Université Pierre & Marie Curie)Verified email at upmc.fr
Bryan J. LuntPhD Candidate, University of Illinois as Urbana-ChampaignVerified email at illinois.edu
Erik Larsson LekholmSahlgrenska Academy, University of GothenburgVerified email at gu.se
Sébastien PfefferInstitut de Biologie Moléculaire et Cellulaire, CNRSVerified email at unistra.fr
Burkhard RostProfessor of Computer Science, Technical University MunichVerified email at tum.de
Martin L MillerSenior Director, AstraZenecaVerified email at astrazeneca.com
Anders Jacobsen SkanderupGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Aaron ArveyArvey ConsultingVerified email at ucsf.edu
Kenneth S. Kosik UC Santa BarbaraVerified email at lifesci.ucsb.edu

Debora Marks

Systems Biology, Harvard Medical School, Broad Institute of Harvard and MIT

Verified email at hms.harvard.edu - Homepage

machine learning genomics drug design statistical inference protein folding & design


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Human microRNA targets B John, AJ Enright, A Aravin, T Tuschl, C Sander, DS Marks PLoS biology 2 (11), e363, 2004	4592	2004
MicroRNA targets in Drosophila AJ Enright, B John, U Gaul, T Tuschl, C Sander, DS Marks Genome biology 5 (1), 1-1, 2003	4013	2003
The microRNA. org resource: targets and expression D Betel, M Wilson, A Gabow, DS Marks, C Sander Nucleic acids research 36 (suppl_1), D149-D153, 2008	3035	2008
Identification of virus-encoded microRNAs S Pfeffer, M Zavolan, FA Grässer, M Chien, JJ Russo, J Ju, B John, ... Science 304 (5671), 734-736, 2004	2135	2004
Direct-coupling analysis of residue coevolution captures native contacts across many protein families F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ... Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011	1591	2011
The small RNA profile during Drosophila melanogaster development AA Aravin, M Lagos-Quintana, A Yalcin, M Zavolan, D Marks, B Snyder, ... Developmental cell 5 (2), 337-350, 2003	1303	2003
Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PloS one 6 (12), e28766, 2011	1283	2011
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and maydownregulate the high affinity cationic amino acid transporter CAT-1 J Chang, E Nicolas, D Marks, C Sander, A Lerro, MA Buendia, C Xu, ... RNA biology 1 (2), 106-113, 2004	1068	2004
Scientific discovery in the age of artificial intelligence H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu, P Chandak, S Liu, ... Nature 620 (7972), 47-60, 2023	903	2023
Protein structure prediction from sequence variation DS Marks, TA Hopf, C Sander Nature biotechnology 30 (11), 1072-1080, 2012	725	2012
miRcode: a map of putative microRNA target sites in the long non-coding transcriptome A Jeggari, DS Marks, E Larsson Bioinformatics 28 (15), 2062-2063, 2012	712	2012
Mutation effects predicted from sequence co-variation TA Hopf, JB Ingraham, FJ Poelwijk, CPI Schärfe, M Springer, C Sander, ... Nature biotechnology 35 (2), 128-135, 2017	706	2017
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs AA Khan, D Betel, ML Miller, C Sander, CS Leslie, DS Marks Nature biotechnology 27 (6), 549-555, 2009	673	2009
Deep generative models of genetic variation capture the effects of mutations AJ Riesselman, JB Ingraham, DS Marks Nature methods 15 (10), 816-822, 2018	626	2018
Three-dimensional structures of membrane proteins from genomic sequencing TA Hopf, LJ Colwell, R Sheridan, B Rost, C Sander, DS Marks Cell 149 (7), 1607-1621, 2012	601	2012
MicroRNA profiling of the murine hematopoietic system S Monticelli, KM Ansel, C Xiao, ND Socci, AM Krichevsky, TH Thai, ... Genome biology 6, 1-15, 2005	575	2005
Disease variant prediction with deep generative models of evolutionary data J Frazer, P Notin, M Dias, A Gomez, JK Min, K Brock, Y Gal, DS Marks Nature 599 (7883), 91-95, 2021	570	2021
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014	545	2014
MicroRNA control of protein expression noise JM Schmiedel, SL Klemm, Y Zheng, A Sahay, N Blüthgen, DS Marks, ... Science 348 (6230), 128-132, 2015	443	2015
The developmental miRNA profiles of zebrafish as determined by small RNA cloning PY Chen, H Manninga, K Slanchev, M Chien, JJ Russo, J Ju, R Sheridan, ... Genes & development 19 (11), 1288-1293, 2005	443	2005

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