| Outbreak of SARS-CoV-2 infections, including COVID-19 vaccine breakthrough infections, associated with large public gatherings—Barnstable County, Massachusetts, July 2021 CM Brown MMWR. Morbidity and mortality weekly report 70, 2021 | 631 | 2021 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 596 | 2021 |
| Benchmarking metagenomics tools for taxonomic classification HY Simon, KJ Siddle, DJ Park, PC Sabeti Cell 178 (4), 779-794, 2019 | 405 | 2019 |
| Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events JE Lemieux, KJ Siddle, BM Shaw, C Loreth, SF Schaffner, ... Science 371 (6529), eabe3261, 2021 | 255 | 2021 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 186 | 2021 |
| Genomic analysis of Lassa virus during an increase in cases in Nigeria in 2018 KJ Siddle, P Eromon, KG Barnes, S Mehta, JU Oguzie, I Odia, ... New England Journal of Medicine 379 (18), 1745-1753, 2018 | 172 | 2018 |
| Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ... Cell Reports Medicine 3 (4), 2022 | 155 | 2022 |
| Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants NL Welch, M Zhu, C Hua, J Weller, ME Mirhashemi, TG Nguyen, ... Nature Medicine 28 (5), 1083-1094, 2022 | 141 | 2022 |
| Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time KG Barnes, AE Lachenauer, A Nitido, S Siddiqui, R Gross, B Beitzel, ... Nature communications 11 (1), 4131, 2020 | 128 | 2020 |
| The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists E Patin, KJ Siddle, G Laval, H Quach, C Harmant, N Becker, A Froment, ... Nature communications 5 (1), 3163, 2014 | 122 | 2014 |
| Capturing sequence diversity in metagenomes with comprehensive and scalable probe design HC Metsky, KJ Siddle, A Gladden-Young, J Qu, DK Yang, P Brehio, ... Nature biotechnology 37 (2), 160-168, 2019 | 111 | 2019 |
| Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection AA Pai, G Baharian, A Pagé Sabourin, JF Brinkworth, Y Nédélec, ... PLoS genetics 12 (9), e1006338, 2016 | 97 | 2016 |
| The epigenomic landscape of African rainforest hunter-gatherers and farmers M Fagny, E Patin, JL MacIsaac, M Rotival, T Flutre, MJ Jones, KJ Siddle, ... Nature communications 6 (1), 10047, 2015 | 89 | 2015 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 88 | 2022 |
| Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs KJ Siddle, L Tailleux, M Deschamps, YHE Loh, C Deluen, B Gicquel, ... PLoS genetics 11 (3), e1005064-e1005064, 2015 | 81 | 2015 |
| A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection KJ Siddle, M Deschamps, L Tailleux, Y Nédélec, J Pothlichet, ... Genome research 24 (5), 850-859, 2014 | 72 | 2014 |
| Genomic evidence for local adaptation of hunter-gatherers to the African rainforest M Lopez, J Choin, M Sikora, K Siddle, C Harmant, HA Costa, M Silvert, ... Current Biology 29 (17), 2926-2935. e4, 2019 | 55 | 2019 |
| The Red Queen's long race: human adaptation to pathogen pressure KJ Siddle, L Quintana-Murci Current Opinion in Genetics & Development 29, 31-38, 2014 | 52 | 2014 |
| Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever ML Boisen, JN Hartnett, JG Shaffer, A Goba, M Momoh, JD Sandi, ... Scientific reports 8 (1), 5939, 2018 | 51 | 2018 |
| Negative selection by spiral inertial microfluidics improves viral recovery and sequencing from blood K Choi, H Ryu, KJ Siddle, A Piantadosi, L Freimark, DJ Park, P Sabeti, ... Analytical chemistry 90 (7), 4657-4662, 2018 | 45 | 2018 |
