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Layla Oesper
Layla Oesper
Associate Professor of Computer Science, Carleton College
Potvrđena adresa e-pošte na carleton.edu - Početna stranica
Naslov
Citirano
Citirano
Godina
THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
L Oesper, A Mahmoody, BJ Raphael
Genome biology 14 (7), 1-21, 2013
2442013
Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
BJ Raphael, JR Dobson, L Oesper, F Vandin
Genome medicine 6 (1), 1-17, 2014
2212014
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data
M El-Kebir, L Oesper, H Acheson-Field, BJ Raphael
Bioinformatics 31 (12), i62-i70, 2015
1722015
Pan-cancer analysis of whole genomes.
S Hirano, L Yang, M Juul, CA Purdie, BP O'Neill, R Kabbe, ...
Nature 578 (DKFZ-2020-01051), 82-93, 2020
1412020
Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures
M El-Kebir, G Satas, L Oesper, BJ Raphael
Cell systems 3 (1), 43-53, 2016
1282016
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
1192021
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
L Oesper, D Merico, R Isserlin, GD Bader
Source code for biology and medicine 6 (1), 1-4, 2011
1192011
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data
L Oesper, G Satas, BJ Raphael
Bioinformatics 30 (24), 3532-3540, 2014
1152014
Reconstructing cancer genomes from paired-end sequencing data
L Oesper, A Ritz, SJ Aerni, R Drebin, BJ Raphael
BMC bioinformatics 13 (6), 1-13, 2012
492012
A consensus approach to infer tumor evolutionary histories
K Govek, C Sikes, L Oesper
Proceedings of the 2018 Acm international conference on bioinformatics …, 2018
332018
Distance measures for tumor evolutionary trees
Z DiNardo, K Tomlinson, A Ritz, L Oesper
Bioinformatics 36 (7), 2090-2097, 2020
222020
Inferring intra-tumor heterogeneity from high-throughput dna sequencing data
L Oesper, A Mahmoody, BJ Raphael
Annual International Conference on Research in Computational Molecular …, 2013
112013
Identifying simultaneous rearrangements in cancer genomes
L Oesper, S Dantas, BJ Raphael
Bioinformatics 34 (2), 346-352, 2018
72018
Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes
C Weinreb, L Oesper, BJ Raphael
BMC genomics 15 (6), 1-11, 2014
62014
p-Coloring classes of torus knots
AL Breiland, L Oesper, L Taalman
Missouri Journal of Mathematical Sciences 21 (2), 120-126, 2009
52009
p-Colorings of Weaving Knots
L Oesper
Citeseer, 2005
52005
Graphyc: Using consensus to infer tumor evolution
K Govek, C Sikes, Y Zhou, L Oesper
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020
42020
Examining tumor phylogeny inference in noisy sequencing data
K Tomlinson, L Oesper
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
42018
Expanding undergraduate exposure to computer science subfields: Resources and lessons from a hands-on computational biology workshop
L Oesper, A Vostinar
Proceedings of the 51st ACM Technical Symposium on Computer Science …, 2020
32020
Parameter, noise, and tree topology effects in tumor phylogeny inference
K Tomlinson, L Oesper
BMC medical genomics 12 (10), 1-14, 2019
22019
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