Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics LG Trabuco, E Villa, K Mitra, J Frank, K Schulten Structure 16 (5), 673-683, 2008 | 952 | 2008 |
Accelerating molecular modeling applications with graphics processors JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten Journal of computational chemistry 28 (16), 2618-2640, 2007 | 933 | 2007 |
Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography LG Trabuco, E Villa, E Schreiner, CB Harrison, K Schulten Methods 49 (2), 174-180, 2009 | 368 | 2009 |
Structural insight into nascent polypeptide chain–mediated translational stalling B Seidelt, CA Innis, DN Wilson, M Gartmann, JP Armache, E Villa, ... Science 326 (5958), 1412-1415, 2009 | 325 | 2009 |
Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis E Villa, J Sengupta, LG Trabuco, J LeBarron, WT Baxter, TR Shaikh, ... Proceedings of the National Academy of Sciences 106 (4), 1063-1068, 2009 | 294 | 2009 |
PepSite: prediction of peptide-binding sites from protein surfaces LG Trabuco, S Lise, E Petsalaki, RB Russell Nucleic acids research 40 (W1), W423-W427, 2012 | 191 | 2012 |
Regulation of the protein-conducting channel by a bound ribosome J Gumbart, LG Trabuco, E Schreiner, E Villa, K Schulten Structure 17 (11), 1453-1464, 2009 | 142 | 2009 |
The role of L1 stalk–tRNA interaction in the ribosome elongation cycle LG Trabuco, E Schreiner, J Eargle, P Cornish, T Ha, Z Luthey-Schulten, ... Journal of molecular biology 402 (4), 741-760, 2010 | 132 | 2010 |
Molecular dissection of human Argonaute proteins by DNA shuffling N Schürmann, LG Trabuco, C Bender, RB Russell, D Grimm Nature structural & molecular biology 20 (7), 818-826, 2013 | 109 | 2013 |
Dynamics of recognition between tRNA and elongation factor Tu J Eargle, AA Black, A Sethi, LG Trabuco, Z Luthey-Schulten Journal of molecular biology 377 (5), 1382-1405, 2008 | 105 | 2008 |
Force-producing ADP state of myosin bound to actin SF Wulf, V Ropars, S Fujita-Becker, M Oster, G Hofhaus, LG Trabuco, ... Proceedings of the National Academy of Sciences 113 (13), E1844-E1852, 2016 | 100 | 2016 |
Protein-induced membrane curvature investigated through molecular dynamics flexible fitting J Hsin, J Gumbart, LG Trabuco, E Villa, P Qian, CN Hunter, K Schulten Biophysical journal 97 (1), 321-329, 2009 | 96 | 2009 |
ATP-sensitive K+ channels in renal mitochondria DV Cancherini, LG Trabuco, NA Rebouças, AJ Kowaltowski American Journal of Physiology-Renal Physiology 285 (6), F1291-F1296, 2003 | 95 | 2003 |
Cryo‐electron microscopy modeling by the molecular dynamics flexible fitting method KY Chan, LG Trabuco, E Schreiner, K Schulten Biopolymers 97 (9), 678-686, 2012 | 86 | 2012 |
Structural model and excitonic properties of the dimeric RC–LH1–PufX complex from Rhodobacter sphaeroides M Şener, J Hsin, LG Trabuco, E Villa, P Qian, CN Hunter, K Schulten Chemical physics 357 (1-3), 188-197, 2009 | 70 | 2009 |
Structural insights into cognate versus near‐cognate discrimination during decoding X Agirrezabala, E Schreiner, LG Trabuco, J Lei, RF Ortiz‐Meoz, ... The EMBO Journal 30 (8), 1497-1507, 2011 | 67 | 2011 |
Stereochemical errors and their implications for molecular dynamics simulations E Schreiner, LG Trabuco, PL Freddolino, K Schulten BMC bioinformatics 12, 1-9, 2011 | 61 | 2011 |
Recognition of the regulatory nascent chain TnaC by the ribosome LG Trabuco, CB Harrison, E Schreiner, K Schulten Structure 18 (5), 627-637, 2010 | 59 | 2010 |
Negative protein–protein interaction datasets derived from large-scale two-hybrid experiments LG Trabuco, MJ Betts, RB Russell Methods 58 (4), 343-348, 2012 | 53 | 2012 |
Applications of the molecular dynamics flexible fitting method LG Trabuco, E Schreiner, J Gumbart, J Hsin, E Villa, K Schulten Journal of structural biology 173 (3), 420-427, 2011 | 47 | 2011 |