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Yupeng He
Yupeng He
Sr. Manager, Bioinformatics, Guardant Health, Inc
Verified email at ucsd.edu - Homepage
Title
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Cited by
Year
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
50892015
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
5992020
Human body epigenome maps reveal noncanonical DNA methylation variation
MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ...
Nature 523 (7559), 212-216, 2015
5582015
Epigenomic diversity in a global collection of Arabidopsis thaliana accessions
T Kawakatsu, SSC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ...
Cell 166 (2), 492-505, 2016
4862016
Molecular criteria for defining the naive human pluripotent state
TW Theunissen, M Friedli, Y He, E Planet, RC O’Neil, S Markoulaki, ...
Cell stem cell 19 (4), 502-515, 2016
4062016
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ...
Science 357 (6351), 600-604, 2017
3472017
Abnormalities in human pluripotent cells due to reprogramming mechanisms
H Ma, R Morey, RC O'Neil, Y He, B Daughtry, MD Schultz, M Hariharan, ...
Nature 511 (7508), 177-183, 2014
3462014
Characterization of Greater Middle Eastern genetic variation for enhanced disease gene discovery
EM Scott, A Halees, Y Itan, EG Spencer, Y He, MA Azab, SB Gabriel, ...
Nature genetics 48 (9), 1071-1076, 2016
2712016
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ...
Genome research 23 (10), 1663-1674, 2013
2382013
An alternative pluripotent state confers interspecies chimaeric competency
J Wu, D Okamura, M Li, K Suzuki, C Luo, L Ma, Y He, Z Li, C Benner, ...
Nature 521 (7552), 316-321, 2015
2342015
Non-CG methylation in the human genome
Y He, JR Ecker
Annual review of genomics and human genetics 16, 55, 2015
2042015
An atlas of dynamic chromatin landscapes in mouse fetal development
DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ...
Nature 583 (7818), 744-751, 2020
180*2020
The developmental potential of iPSCs is greatly influenced by reprogramming factor selection
Y Buganim, S Markoulaki, N van Wietmarschen, H Hoke, T Wu, K Ganz, ...
Cell stem cell 15 (3), 295-309, 2014
1582014
Proteogenomic database construction driven from large scale RNA-seq data
S Woo, SW Cha, G Merrihew, Y He, N Castellana, C Guest, M MacCoss, ...
Journal of proteome research 13 (1), 21-28, 2014
1222014
Minimal Residual Disease Detection using a Plasma-only Circulating Tumor DNA Assay in Patients with Colorectal CancerPlasma-only ctDNA-guided MRD Detection in Patients with CRC
AR Parikh, EE Van Seventer, G Siravegna, AV Hartwig, A Jaimovich, Y He, ...
Clinical Cancer Research 27 (20), 5586-5594, 2021
902021
An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays
NE Castellana, Z Shen, Y He, JW Walley, SP Briggs, V Bafna
Molecular & Cellular Proteomics 13 (1), 157-167, 2014
872014
Improved regulatory element prediction based on tissue-specific local epigenomic signatures
Y He, DU Gorkin, DE Dickel, JR Nery, RG Castanon, AY Lee, Y Shen, ...
Proceedings of the National Academy of Sciences 114 (9), E1633-E1640, 2017
762017
Functional human oocytes generated by transfer of polar body genomes
H Ma, RC O’Neil, NM Gutierrez, M Hariharan, ZZ Zhang, Y He, ...
Cell stem cell 20 (1), 112-119, 2017
762017
Spatiotemporal DNA methylome dynamics of the developing mouse fetus
Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo, RG Castanon, JR Nery, ...
Nature 583 (7818), 752-759, 2020
71*2020
PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants
BC Willige, M Zander, CY Yoo, A Phan, RM Garza, SA Trigg, Y He, ...
Nature genetics 53 (7), 955-961, 2021
272021
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Articles 1–20