Prati
Mikko Rautiainen
Mikko Rautiainen
Postdoctoral Researcher, Insitute for Molecular Medicine Finland
Potvrđena adresa e-pošte na helsinki.fi
Naslov
Citirano
Citirano
Godina
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
20142022
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
3792023
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139, 2020
1972020
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
bioRxiv, 2022
1552022
GraphAligner: rapid and versatile sequence-to-graph alignment
M Rautiainen, T Marschall
Genome biology 21 (1), 1-28, 2020
1532020
Telomere-to-telomere assembly of diploid chromosomes with Verkko
M Rautiainen, S Nurk, BP Walenz, GA Logsdon, D Porubsky, A Rhie, ...
Nature Biotechnology, 1-9, 2023
1482023
Bit-parallel sequence-to-graph alignment
M Rautiainen, V Mäkinen, T Marschall
Bioinformatics 35 (19), 3599-3607, 2019
722019
Haplotype threading: accurate polyploid phasing from long reads
SD Schrinner, RS Mari, J Ebler, M Rautiainen, L Seillier, JJ Reimer, ...
Genome biology 21 (1), 1-22, 2020
712020
A graph-based approach to diploid genome assembly
S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall
Bioinformatics 34 (13), i105-i114, 2018
682018
MBG: Minimizer-based sparse de Bruijn Graph construction
M Rautiainen, T Marschall
Bioinformatics 37 (16), 2476-2478, 2021
672021
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 1-9, 2020
612020
The complete sequence of a human genome. bioRxiv 2021
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Google Scholar, 0
25
Gaps and complex structurally variant loci in phased genome assemblies
D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ...
Genome Research 33 (4), 496-510, 2023
202023
Aligning sequences to general graphs in O (V+ mE) time
M Rautiainen, T Marschall
bioRxiv, 216127, 2017
192017
The variation and evolution of complete human centromeres
GA Logsdon, AN Rozanski, F Ryabov, T Potapova, VA Shepelev, Y Mao, ...
bioRxiv, 2023.05. 30.542849, 2023
162023
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
162019
Aligning sequences to general graphs in
M Rautiainen, T Marschall
O (V+ mE), 216-127, 2017
122017
Aligning sequences to general graphs in O (V+ mE) time. bioRxiv
M Rautiainen, T Marschall
Cold Spring Harbor Laboratory, 2017
122017
AERON: Transcript quantification and gene-fusion detection using long reads
M Rautiainen, DA Durai, Y Chen, L Xin, HM Low, J Göke, T Marschall, ...
BioRxiv, 2020
112020
The complete sequence of a human genome. bioRxiv, 2021.05. 26.445798
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
92021
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