| Single-cell-based analysis highlights a surge in cell-to-cell molecular variability preceding irreversible commitment in a differentiation process A Richard, L Boullu, U Herbach, A Bonnafoux, V Morin, E Vallin, ... PLoS biology 14 (12), e1002585, 2016 | 210 | 2016 |
| Inferring gene regulatory networks from single-cell data: a mechanistic approach U Herbach, A Bonnaffoux, T Espinasse, O Gandrillon BMC systems biology 11, 1-15, 2017 | 72 | 2017 |
| WASABI: a dynamic iterative framework for gene regulatory network inference A Bonnaffoux, U Herbach, A Richard, A Guillemin, S Gonin-Giraud, ... BMC bioinformatics 20, 1-19, 2019 | 46 | 2019 |
| Stochastic gene expression with a multistate promoter: Breaking down exact distributions U Herbach SIAM Journal on Applied Mathematics 79 (3), 1007-1029, 2019 | 22 | 2019 |
| Mechanistic modelling of daphnid-algae dynamics within a laboratory microcosm D Lamonica, U Herbach, F Orias, B Clément, S Charles, C Lopes Ecological modelling 320, 213-230, 2016 | 18 | 2016 |
| Universality of cell differentiation trajectories revealed by a reconstruction of transcriptional uncertainty landscapes from single-cell transcriptomic data NP Gao, O Gandrillon, A Páldi, U Herbach, R Gunawan bioRxiv, 2020.04. 23.056069, 2020 | 17 | 2020 |
| One model fits all: combining inference and simulation of gene regulatory networks E Ventre, U Herbach, T Espinasse, G Benoit, O Gandrillon PLoS Computational Biology 19 (3), e1010962, 2023 | 11 | 2023 |
| Modélisation stochastique de l’expression des gènes et inférence de réseaux de régulation U Herbach Université de Lyon, 2018 | 5 | 2018 |
| Single-cell transcriptional uncertainty landscape of cell differentiation NP Gao, O Gandrillon, A Páldi, U Herbach, R Gunawan F1000Research 12 (426), 426, 2023 | 3 | 2023 |
| Gene regulatory network inference from single-cell data using a self-consistent proteomic field U Herbach arXiv preprint arXiv:2109.14888, 2021 | 3 | 2021 |
| Stochastic modeling of a gene regulatory network driving B cell development in germinal centers A Koshkin, U Herbach, MR Martínez, O Gandrillon, F Crauste Plos one 19 (3), e0301022, 2024 | | 2024 |
| Effects of a physical activity and endometriosis-based education program delivered by videoconference on endometriosis symptoms: the CRESCENDO program (inCRease physical … G Escriva-Boulley, CA Philip, S Warembourg, L Lenotre, P Flore, P Faure, ... Trials 24 (1), 759, 2023 | | 2023 |
| Harissa: stochastic simulation and inference of gene regulatory networks based on transcriptional bursting U Herbach International Conference on Computational Methods in Systems Biology, 97-105, 2023 | | 2023 |
| Harissa: tools for mechanistic gene network inference from single-cell data U Herbach | | 2023 |
