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Ernesto Perez-Rueda
Ernesto Perez-Rueda
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From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli
D Thieffry, AM Huerta, E Pérez‐Rueda, J Collado‐Vides
Bioessays 20 (5), 433-440, 1998
6371998
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ...
Nucleic acids research 44 (D1), D133-D143, 2016
5272016
The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
E Pérez-Rueda, J Collado-Vides
Nucleic acids research 28 (8), 1838-1847, 2000
4162000
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12
H Salgado, A Santos-Zavaleta, S Gama-Castro, D Millán-Zárate, ...
Nucleic acids research 29 (1), 72-74, 2001
3112001
Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens
S Tenorio-Salgado, R Tinoco, R Vazquez-Duhalt, J Caballero-Mellado, ...
Bioengineered 4 (4), 236-243, 2013
1452013
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
E Pérez-Rueda, J Collado-Vides, L Segovia
Computational biology and chemistry 28 (5-6), 341-350, 2004
1282004
Common history at the origin of the position–function correlation in transcriptional regulators in archaea and bacteria
E Pérez-Rueda, J Collado-Vides
Journal of molecular evolution 53 (3), 172-179, 2001
1092001
Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes-a genomic approach
S Moreno-Campuzano, SC Janga, E Pérez-Rueda
BMC genomics 7 (1), 1-10, 2006
922006
Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin
E Pérez-Rueda, SC Janga
Molecular biology and evolution 27 (6), 1449-1459, 2010
902010
Global analysis of transcriptional regulators in Staphylococcus aureus
JA Ibarra, E Pérez-Rueda, RK Carroll, LN Shaw
BMC genomics 14 (1), 1-12, 2013
802013
Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors
E Perez-Rueda, R Hernandez-Guerrero, MA Martinez-Nuñez, ...
PloS one 13 (4), e0195332, 2018
702018
Transcription unit conservation in the three domains of life: a perspective from Escherichia coli
G Moreno-Hagelsieb, V Treviño, E Pérez-Rueda, TF Smith, ...
TRENDS in Genetics 17 (4), 175-177, 2001
692001
A network perspective on the evolution of metabolism by gene duplication
JJ Díaz-Mejía, E Pérez-Rueda, L Segovia
Genome biology 8 (2), 1-10, 2007
622007
The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors
JA Ibarra, E Pérez-Rueda, L Segovia, JL Puente
Genetica 133 (1), 65-76, 2008
532008
Coiled‐coil domains enhance the membrane association of Salmonella type III effectors
LA Knodler, JA Ibarra, E Pérez‐Rueda, CK Yip, O Steele‐Mortimer
Cellular microbiology 13 (10), 1497-1517, 2011
482011
The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution
G Hernández-Montes, JJ Díaz-Mejía, E Pérez-Rueda, L Segovia
Genome biology 9 (6), 1-15, 2008
482008
The hidden universal distribution of amino acids biosynthetic networks: a genomic perspective on its origins and evolution
G Hernandez-Montes, JJ Diaz-Mejia, E Perez-Rueda, L Segovia
Genome Biol 9 (6), 0
48*
Biochemical characterization of recombinant L-asparaginase (AnsA) from Rhizobium etli, a member of an increasing rhizobial-type family of L-asparaginases
A Moreno-Enriquez, Z Evangelista-Martínez, EG Gonzalez-Mondragon, ...
Journal of microbiology and biotechnology 22 (3), 292-300, 2012
472012
Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans
E Martínez-Romero, N Rodríguez-Medina, M Beltrán-Rojel, ...
salud pública de méxico 60, 56-62, 2018
462018
Genomic position analyses and the transcription machinery
E Pérez-Rueda, JD Gralla, J Collado-Vides
Journal of molecular biology 275 (2), 165-170, 1998
451998
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