Xin Gao

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Yu Li (李煜)Assistant Professor, Computer Science & Engineering, Chinese University of Hong KongVerified email at cse.cuhk.edu.hk
hiroyuki kuwaharaResearch Scientist at KAUSTVerified email at kaust.edu.sa
Ming FanHangzhou Dianzi UniversityVerified email at hdu.edu.cn
Jing-Yan WangResearch Scientist, New York UniversityVerified email at nyu.edu
Juexiao ZhouPhD Candidate, King Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Sheng WangZelixir BiotechVerified email at zelixir.com
Ramzan UmarovPostdoctoral researcher, RIKENVerified email at riken.jp
Robert HoehndorfKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Xuhui HuangHirschfelder Chair in Theoretical Chemistry, University of Wisconsin-Madison (previously at HKUST)Verified email at chem.wisc.edu
Fatima Zohra SmailiMcGill UniversityVerified email at mail.mcgill.ca
Somayah AlbaradeiPhDVerified email at kaust.edu.sa
Meshari AlazmiAssociate Professor, University of Ha'ilVerified email at kaust.edu.sa
Abdul-Hamid EmwasKAUSTVerified email at kaust.edu.sa
Xiangliang ZhangAssociate Professor, Computer Science and Engineering, University of Notre DameVerified email at nd.edu
Haoyang LiPhD candidate, King Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Maha A. ThafarAssistant Professor, Collage of computers & information technology, Taif University, KUAST AlumniVerified email at kaust.edu.sa
Stefan AroldProfessor of Bioscience at King Abdullah University of Science and Technology (KAUST)Verified email at kaust.edu.sa
Lizhong Ding (丁立中)Inception Institute of Artificial Intelligence (IIAI), Abu Dhabi, UAEVerified email at inceptioniai.org
Renmin Han (韩仁敏)Research Center for Mathematics and Interdisciplinary Sciences, Shandong UniversityVerified email at sdu.edu.cn
Peng YangMetaVerified email at fb.com

Xin Gao

Professor, Computer Sciences; Director, Computational Bioscience Research Center

Verified email at kaust.edu.sa - Homepage

Bioinformatics computational biology machine learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Deep learning in bioinformatics: Introduction, application, and perspective in the big data era Y Li, C Huang, L Ding, Z Li, Y Pan, X Gao Methods 166, 4-21, 2019	312	2019
DEEPre: sequence-based enzyme EC number prediction by deep learning Y Li, S Wang, R Umarov, B Xie, M Fan, L Li, X Gao Bioinformatics, btx680, 2017	241	2017
Bioinformatics clouds for big data manipulation L Dai, X Gao, Y Guo, J Xiao, Z Zhang Biology direct 7 (1), 43, 2012	194	2012
A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis L Zhou, Z Li, J Zhou, H Li, Y Chen, Y Huang, D Xie, L Zhao, M Fan, ... IEEE Transactions on Medical Imaging 39 (8), 2638-2652, 2020	188	2020
Recommendations and standardization of biomarker quantification using NMR-based metabolomics with particular focus on urinary analysis AH Emwas, R Roy, RT McKay, D Ryan, L Brennan, L Tenori, C Luchinat, ... Journal of proteome research 15 (2), 360-373, 2016	143	2016
Non-negative matrix factorization by maximizing correntropy for cancer clustering JJY Wang, X Wang, X Gao BMC bioinformatics 14 (1), 1-11, 2013	142	2013
Recommended strategies for spectral processing and post-processing of 1D ¹H-NMR data of biofluids with a particular focus on urine AH Emwas, E Saccenti, X Gao, RT McKay, VAPM Dos Santos, R Roy, ... Metabolomics 14, 1-23, 2018	141	2018
Opa2vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction FZ Smaili, X Gao, R Hoehndorf Bioinformatics 35 (12), 2133-2140, 2019	136	2019
Learning from weak and noisy labels for semantic segmentation Z Lu, Z Fu, T Xiang, P Han, L Wang, X Gao IEEE transactions on pattern analysis and machine intelligence 39 (3), 486-500, 2017	135	2017
Semantic similarity and machine learning with ontologies M Kulmanov, FZ Smaili, X Gao, R Hoehndorf Briefings in Bioinformatics, 2020	132	2020
GCN-MF: Disease-Gene Association Identification By Graph Convolutional Networks and Matrix Factorization P Han, P Yang, P Zhao, S Shang, Y Liu, J Zhou, X Gao, P Kalnis Proceedings of the 25th ACM SIGKDD International Conference on Knowledge …, 2019	128	2019
Multiple graph regularized nonnegative matrix factorization JJY Wang, H Bensmail, X Gao Pattern Recognition 46 (10), 2840-2847, 2013	125	2013
Onto2vec: joint vector-based representation of biological entities and their ontology-based annotations FZ Smaili, X Gao, R Hoehndorf Bioinformatics 34 (13), i52-i60, 2018	117	2018
mlDEEPre: Multi-functional enzyme function prediction with hierarchical multi-label deep learning Z Zou, S Tian, X Gao, Y Li Frontiers in Genetics 9, 714, 2018	98	2018
DeepSimulator: a deep simulator for Nanopore sequencing Y Li, R Han, C Bi, M Li, S Wang, X Gao Bioinformatics 34 (17), 2899-2908, 2018	93	2018
Promoter analysis and prediction in the human genome using sequence-based deep learning models R Umarov, H Kuwahara, Y Li, X Gao, V Solovyev Bioinformatics 35 (16), 2730-2737, 2019	89	2019
Bridge helix bending promotes RNA polymerase II backtracking through a critical and conserved threonine residue LT Da, F Pardo-Avila, L Xu, DA Silva, L Zhang, X Gao, D Wang, X Huang Nature communications 7 (1), 11244, 2016	87	2016
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques MA Thafar, RS Olayan, H Ashoor, S Albaradei, VB Bajic, X Gao, ... Journal of Cheminformatics 12 (1), 1-17, 2020	86	2020
Towards artificial general intelligence via a multimodal foundation model N Fei, Z Lu, Y Gao, G Yang, Y Huo, J Wen, H Lu, R Song, X Gao, T Xiang, ... Nature Communications 13 (1), 1-13, 2022	85	2022
PICKY: a novel SVD-based NMR spectra peak picking method B Alipanahi, X Gao, E Karakoc, L Donaldson, M Li Bioinformatics 25 (12), i268, 2009	80	2009

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