| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 441 | 2020 |
| Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer JM Chan*, A Quintanal-Villalonga*, VR Gao*, Y Xie*, V Allaj, ... Cancer cell 39 (11), 1479-1496. e18, 2021 | 263 | 2021 |
| Tumor microenvironment-derived NRG1 promotes antiandrogen resistance in prostate cancer Z Zhang, WR Karthaus, YS Lee, VR Gao, C Wu, JW Russo, M Liu, ... Cancer Cell 38 (2), 279-296. e9, 2020 | 201 | 2020 |
| Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis C Burdziak, D Alonso-Curbelo, T Walle, J Reyes, FM Barriga, D Haviv, ... Science 380 (6645), eadd5327, 2023 | 79 | 2023 |
| Drivers of heterogeneity in synovial fibroblasts in rheumatoid arthritis MH Smith*, VR Gao*, PK Periyakoil, A Kochen, EF DiCarlo, SM Goodman, ... Nature Immunology, 1-11, 2023 | 61 | 2023 |
| A non-invasive artificial intelligence approach for the prediction of human blastocyst ploidy: a retrospective model development and validation study J Barnes, M Brendel, VR Gao, S Rajendran, J Kim, Q Li, JE Malmsten, ... The Lancet Digital Health 5 (1), e28-e40, 2023 | 52 | 2023 |
| Epiphany: predicting hi-c contact maps from 1d epigenomic signals R Yang*, A Das*, VR Gao, A Karbalayghareh, WS Noble, JA Bilmes, ... Genome Biology 24 (1), 1-26, 2023 | 30 | 2023 |
| Ex uno plures: Splitting one model into an ensemble of subnetworks Z Zhang, VR Gao, MR Sabuncu arXiv preprint arXiv:2106.04767, 2021 | 7 | 2021 |
| Accelerating Batch Active Learning Using Continual Learning Techniques A Das*, G Bhatt*, M Bhalerao, VR Gao, R Yang, J Bilmes arXiv preprint arXiv:2305.06408, 2023 | 6 | 2023 |
| Protocol to dissociate, process, and analyze the human lung tissue using single-cell RNA-seq Á Quintanal-Villalonga, JM Chan, I Masilionis, VR Gao, Y Xie, V Allaj, ... STAR protocols 3 (4), 101776, 2022 | 6 | 2022 |
| ChromaFold predicts the 3D contact map from single-cell chromatin accessibility VR Gao, R Yang, A Das, R Luo, H Luo, DR McNally, I Karagiannidis, ... Nature Communications 15 (1), 9432, 2024 | 4 | 2024 |
| Epigenetic plasticity cooperates with emergent cell-cell interactions to drive neoplastic tissue remodeling in the pancreas C Burdziak, D Alonso-Curbelo, T Walle, FM Barriga, J Reyes, Y Xie, ... Biorxiv, 2022.07. 26.501417, 2022 | 4 | 2022 |
| Heterogeneity of Inflammation-associated Synovial Fibroblasts in Rheumatoid Arthritis and Its Drivers MH Smith*, VR Gao*, M Schizas, A Kochen, EF DiCarlo, SM Goodman, ... bioRxiv, 2022.02. 28.482131, 2022 | 3 | 2022 |
| Continual Active Learning AM Das*, G Bhatt*, MM Bhalerao, VR Gao, R Yang, J Bilmes | 2 | 2022 |
| Signatures of plasticity and immunosuppression in a single-cell atlas of human small cell lung cancer. JM Chan, A Quintanal-Villalonga, V Gao, V Allaj, I Masilionis, ... Journal of Clinical Oncology 39 (15_suppl), 8509-8509, 2021 | 1 | 2021 |
| Enhancing gazetteers for named entity recognition in conversational recommender systems N Dingwall*, VR Gao* Proceedings of the Joint KaRS & ComplexRec Workshop. CEUR-WS, 2021 | 1 | 2021 |
| An evaluation benchmark for generative AI in security domain M Ghashami, M Kuznetsov, V Gao, G Teng, P Wallis, J Xie, A Torkamani, ... | | 2024 |
| Abstract NG05: Multi-omic approaches to study the role of plasticity in therapy resistance and metastasis in lung cancer A Quintanal-Villalonga*, JM Chan*, VR Gao*, Y Xie*, D Pe’er, CM Rudin Cancer Research 83 (7_Supplement), NG05-NG05, 2023 | | 2023 |
| Drivers of Heterogeneity in Synovial Fibroblasts in Rheumatoid Arthritis M Smith, V Gao, E DiCarlo, S Goodman, T Norman, L Donlin, C Leslie, ... ARTHRITIS & RHEUMATOLOGY 74, 993-997, 2022 | | 2022 |
| Heterogeneity of Inflammatory HLA-DR+ Synovial Fibroblasts in Rheumatoid Arthritis Is Driven by Responses to Leukocyte-Derived Cytokines M Smith, A Kochen, V Gao, M Schizas, E DiCarlo, S Goodman, C Leslie, ... ARTHRITIS & RHEUMATOLOGY 73, 37-39, 2021 | | 2021 |
