Christian L. Müller
Christian L. Müller
Ludwig-Maximilians-Universität München; Helmholtz Zentrum München; Flatiron Institute, New York
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Sparse and compositionally robust inference of microbial ecological networks
ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau
PLoS computational biology 11 (5), e1004226, 2015
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ...
Genome medicine 8, 1-20, 2016
Fungi stabilize connectivity in the lung and skin microbial ecosystems
L Tipton, CL Müller, ZD Kurtz, L Huang, E Kleerup, A Morris, R Bonneau, ...
Microbiome 6, 1-14, 2018
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity
VE Ruiz, T Battaglia, ZD Kurtz, L Bijnens, A Ou, I Engstrand, X Zheng, ...
Nature communications 8 (1), 518, 2017
NetCoMi: network construction and comparison for microbiome data in R
S Peschel, CL Müller, E von Mutius, AL Boulesteix, M Depner
Briefings in Bioinformatics, 2020
4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments
R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ...
PLoS computational biology 12 (3), e1004780, 2016
Don't fall for tuning parameters: tuning-free variable selection in high dimensions with the TREX
J Lederer, C Müller
Proceedings of the AAAI conference on artificial intelligence 29 (1), 2015
Usefulness of dismissing and changing the coach in professional soccer
A Heuer, C Müller, O Rubner, N Hagemann, B Strauss
PloS one 6 (3), e17664, 2011
Robust classification of protein variation using structural modelling and large-scale data integration
EH Baugh, R Simmons-Edler, CL Müller, RF Alford, N Volfovsky, AE Lash, ...
Nucleic acids research 44 (6), 2501-2513, 2016
Particle swarm CMA evolution strategy for the optimization of multi-funnel landscapes
CL Muller, B Baumgartner, IF Sbalzarini
Evolutionary Computation, 2009. CEC'09. IEEE Congress on, 2685-2692, 2009
Optimization of convex functions with random pursuit
SU Stich, CL Muller, B Gartner
SIAM Journal on Optimization 23 (2), 1284-1309, 2013
Microbial networks in SPRING-Semi-parametric rank-based correlation and partial correlation estimation for quantitative microbiome data
G Yoon, I Gaynanova, CL Müller
Frontiers in genetics 10, 516, 2019
Global characterization of the CEC 2005 fitness landscapes using fitness-distance analysis
CL Müller, IF Sbalzarini
Applications of Evolutionary Computation: EvoApplications 2011: EvoCOMPLEX …, 2011
Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing
T Äijö, CL Müller, R Bonneau
Bioinformatics 34 (3), 372-380, 2018
The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli
H Temmel, C Müller, M Sauert, O Vesper, A Reiss, J Popow, J Martinez, ...
Nucleic acids research 45 (8), 4708-4721, 2017
scCODA is a Bayesian model for compositional single-cell data analysis
M Buettner, J Ostner, CL Mueller, FJ Theis, B Schubert
Nature communications 12 (1), 6876, 2021
Perspective functions: Proximal calculus and applications in high-dimensional statistics
PL Combettes, CL Müller
Journal of Mathematical Analysis and Applications 457 (2), 1283-1306, 2018
Fused regression for multi-source gene regulatory network inference
KY Lam, ZM Westrick, CL Müller, L Christiaen, R Bonneau
PLoS computational biology 12 (12), e1005157, 2016
Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions
A Plessis, C Hafemeister, O Wilkins, ZJ Gonzaga, RS Meyer, I Pires, ...
Elife 4, e08411, 2015
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